Biomedical Optics
I.Y.
Son and B. Yazıcı “Near Infrared
Imaging and
Spectroscopy for Brain Activity Monitoring”, in Advances
in Sensing with Security Applications, pg. 341-372, NATO
Advanced Study Institute, NATO Security
through Science Series-A: Chemistry and Biology, Springer, Edited by J.
Byrnes,
2006.
K.
Kwon, B. Yazıcı, and M. Guven
“Two-level
domain
decomposition methods for diffuse optical tomography,” in
press. Inverse Problems.
B. Alacam, B. Yazıcı
X. Intes, B. Chance, “Extended
Kalman filtering for the modeling and analysis of ICG pharmacokinetics
in
cancerous tumors using NIR optical methods,” IEEE
Transactions in Biomedical Engineering, Vol. 53-10, pp: 1861-1871, 2006.
M. Guven, B. Yazıcı,
X. Intes, B. Chance, “Diffuse optical
tomography
with a-priori anatomical information,” Physics
in Medicine and Biology, Vol. 50,
pp: 2837-2858, June, 2005.
M.
Guven, B. Yazıcı,
E. Giladi, K. Kwon, X. Intes, “Error in
diffuse optical
absorption imaging due to Born approximation,”
submitted to Journal of Optical Society
of America, July 2006.
X.
Intes, C. Maloux, M. Guven,
B. Yazıcı, B. Chance, “Diffuse optical
tomography
with physiological and spatial a-priori constraints,” Physics in Medicine and Biology, Vol. 49, pp: 155-163, May
2004.
M.
Guven, B. Yazıcı,
E. Giladi, K. Kwon, X. Intes “Effect of
discretization
error and adaptive mesh generation in diffuse optical absorption imaging,”
accepted to Inverse Problems, August
2006.
K.
Kwon and B. Yazıcı, “Born expansion
and Frechet
derivatives in diffuse optical tomography,” submitted to Inverse Problems, May 2006. In review
M.
Guven, K. Kwon, B. Yazıcı
and V. Ntziachristos, “Fluorescence
diffuse optical
Image reconstruction with a priori information,” submitted to SPIE Photonics West 2007. In Review.
B.
Alacam, B. Yazıcı, A. Serdaroglu, B.
Chance, S. Nioko, and X. Intes, “Reconstruction
of
spatially resolved pharmacokinetic rate images of fluorescence agents
in FDOT,”
to appear in the 28th IEEE EMBS
Conference, September 2006.
A.
Serdaroglu, B. Yazıcı, V. Ntziachristos, “Fluorescence
molecular
tomography based on a priori information,”
Proceedings of the Optical Society of America (OSA) Biomedical Optics
Meeting,
B.
Alacam, B. Yazıcı, A. Serdaroglu, X. Intes
and B. Chance, “Direct
reconstruction of pharmacokinetic rate images of indocyanine green in
fluorescence molecular tomography,” Proceedings
of the Optical Society of America (OSA) Biomedical Optics Meeting,
Fort
Lauderdale, FL, March 2006.
A.
Serdaroglu, B. Yazıcı, K. Kwon, "Optimum Source
Design for
Detection of Heterogeneities in Diffuse Optical Imaging," Proceedings of SPIE Photonic West, vol.
6139, pp: 297-307,
B.
Alacam, B. Yazıcı, X. Intes, S. Nioko, B. Chance, “Spatially
resolved
pharmacokinetic rate images of ICG using near infrared optical methods,”
Proceedings of SPIE Photonic West, Vol.
6088, pp: 455-464,
M.
Guven, B. Yazıcı,
X.Intes, B.
Chance, “A hierarchical Bayesian formulation for diffuse optical
tomography
with a priori anatomical information", Proceedings
of the ASILOMAR,
M.
Guven, B. Yazıcı,
X.Intes, B. Chance, “Diffuse optical
tomography
with a priori anatomical information", Proceedings of
the Applied Imagery Pattern Recognition (AIPR) Workshop
Emerging Technologies and Applications for Imagery Pattern Recognition,
Washington, DC, USA, October 19-21.
M.
Guven, K. Kwon, B. Yazıcı,
E. Giladi, X. Intes, "A Priori
Interpolation
Error Based Mesh Generation for Diffuse Optical Tomography" Proceedings of the Applied Imagery Pattern
Recognition (AIPR) Workshop Emerging Technologies and Applications for
Imagery
Pattern Recognition, Washington, DC, USA, October 19-21.
B.
Alacam, B. Yazıcı, X. Intes, B. Chance,
“Analysis
of ICG
pharmacokinetics in cancerous tumors using NIR optical methods”
in Proceedings of EMBS-27th Anniversary
Conference, pp: 62-65,
I.
Son, M. Guhe, W. Gray, Yazıcı,
and M. Schoelles, “ Human
performance
assessment using fNIR,” Proceedings
of SPIE 5797: Biomonitoring
for Physiological and Cognitive Performance
During Military Operations, pp: 158–169, March
31–
K.
Kwon, I.Y Son, B. Yazıcı, “Domain
decomposition
method for diffuse optical tomography,” Proceedings
of SPIE, Computational Imaging
K.
Kwon, I.Y. Son, and B. Yazıcı, “Two-level
overlapping
domain decomposition algorithm for nonlinear inverse DOT problem,”
Proceedings of SPIE in Optical Tomography
and Spectroscopy of Tissue
B.
Alacam, B. Yazıcı, X. Intes, B. Chance,
“Extended
Kalman filtering
framework for the modeling and analysis of ICG pharmacokinetics,”
Proceedings of 2005 SPIE in Optical
Tomography and Spectroscopy of Tissue
I.
Son, M. Guven, B. Yazıcı,
X. Intes, ”A two-level
domain
decomposition method for inverse diffuse optical tomography,”
Proceedings of IEEE Int. Conference in Image
Processing, pp. 3315-3318,
M.
Guven, B. Yazıcı,
X. Intes, B. Chance, “An
adaptive multigrid algorithm for region of interest diffuse optical
tomography,”
Proceedings of IEEE International
Conference on Image Processing, Vol. 2 ,
pp:II - 823-6,
M.
Guven, B. Yazıcı,
X. Intes, B. Chance, “3D
Diffuse Optical Tomography with Prior Anatomical and Functional
Information,”
Proceedings of the Joint SPIE-OSA ECBO –
The European Conference on Biomedical Optics, Vol. 5138, pp:
268-280, 2003.
M.
Guven, B. Yazıcı,
X. Intes, B. Chance, “An
adaptive V-grid algorithm for diffuse optical tomography,” Proceedings of IEEE 29th Annual
Bioengineering Conference, pp: 95 – 97, 2003 22-23 March
2003.
K.
Izzetoglu, G. Yurtsever,
A.
Bozkurt, B. Yazıcı,
S. Bunce, K. Pourrezaei,
B.
Onaral “NIR
spectroscopy measurements of cognitive load elicited by GKT and target
categorization,” Proceedings of IEEE
36th Hawaii International Conference on System Sciences, pp:
129-134,
January 2003
M.
Guven, B. Yazıcı,
X. Intes, B. Chance, “Diffuse optical tomography with a priori
information
derived from magnetic resonance images,“ Proceedings
of Optical Tomography and Spectroscopy of Tissue V conference at the
SPIE
Biomedical optics society 2003, Vol. 4955, pp: 634-646, January
2003, San
Jose, CA.
M.
Guven, B. Yazıcı,
X. Intes, B. Chance and Y. Zhang, “Recursive
least squares
algorithm for diffuse optical tomography,” Proceedings
of the IEEE 28th Annual Northeast Bioengineering Conference,
pp: 273 -274,